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Key words: Aedes; Haplotypes; Pedigree; DNA, Mitochondrial; Peru (source: MeSH
NLM).
INTRODUCTION
Aedes aegypti is the vector of the four serotypes of dengue virus (DENV) is found in nearly 100
tropical countries and it is estimated that 2.5 billion people live in areas where there is a risk of
transmission of the epidemic. It is considered one of the most efficient vectors in the
transmission of dengue because it is highly anthropophilic.
In Peru, the Aedes aegypti was first detected in 1852, it has entered through the northern border
from the region of Guayaquil (Ecuador), progressively extending along the coast of Peru. In 1938,
the results of a national survey showed that 11 of the 24 departments of Peru were infested
with Aedes aegypti, announcing its eradication by 1958, as a result of intensive control campaign
carried out by the Ministry of Health of Peru, with support the Pan American Health
Organization. However, a reinfestation of Aedes aegypti was detected in Loreto in 1984, from
which expanded to various departments of Peru. In 2001 it was reported his presence in the city
of Lima and this was associated, in 2005, an epidemic of dengue in the district of Comas. In 2012,
the General Directorate of Epidemiology of Peru reported that Aedes aegypti was present in 17
departments of Peru and the DENV circulating in 15 of them.
The wide distribution of this vector in Peruvian territory, with the serious consequences that
bring dengue epidemics, necessitate the development and the development of control
strategies. Previous studies indicate that knowledge of the genetic variability of this vector can
contribute to the design of vector control strategies. A viable for the study of genetic variability
of Aedes aegypti alternative is via mitochondrial DNA. Which has numerous advantages for
studying evolutionary relationships, since its length is much smaller than the DNA found in the
chromosomes in the nucleus, it is abundant, has a higher rate of evolution, has great
intraspecific variation and is uniparenteral inheritance . Among the mitochondrial genes, gene
nicotinamide adenine dinucleotide subunit 4 (ND4) has proven to be an excellent marker for the
analysis of the genetic structure of the population and colonization events of Aedes aegypti. The
study of changes in gene ND4 to determine Aedes aegypti haplotypes existing in different
geographic areas, which you could also take specific measures. The aim of this study was to
establish the genetic variability of Aedes aegypti by mitochondrial gene ND4 in some endemic
areas for dengue in Peru.
THE STUDY
A cross-sectional study, for which 49 specimens of Aedes aegypti (larvae or adults) randomly
selected between 2006 and 2013 collected from eleven regions of endemic Peru for dengue,
were included and also have a surveillance system was conducted entomological: Amazonas
(Bagua); Cusco (Quillabamba and Camanti); Loreto (Iquitos); Cajamarca (Jan); Lima (Comas and
Jicamarca); Madre de Dios (Puerto Maldonado); Piura (Sullana and Castilla); Ucayali (Pucallpa);
San Martin (Tarapoto); La Libertad (Trujillo) and Tumbes (La Cruz and Villa Primavera), where
both previously reported the presence of Aedes aegypti and dengue cases. Aedes aegypti
specimens were captured in urban, indoor air and preserved in alcohol area 70 to be
transported to the National Institute of Health (Annex 1). Besides these specimens were
included in the analysis twelve previously reported sequences in GenBank, which were used as
standards of comparison with sequences found in the present study. (Table 1).
Table 1. list of sequences of Aedes aegypti and aedes albopictus that had a previous deposit in
genebanks.
DNA isolation was performed using silica membranes (DNeasy Blood & Tissue Kit, Qiagen,
Hilden, Germany) protocol designed for the purification of total DNA from insect over 50 mg of
weight.
A fragment of 377 bp of the mitochondrial gene Ae ND4. aegypti was amplified by PCR, the
reaction volume was 25 uL, with a final concentration of 1x PCR Buffer (Invitrogen), 3 mM MgCl2
(Invitrogen), 400 uM dNTPs mix (Applied Biosystems), 0.4 uM each first reported previously, 1
U / mL of Taq polymerase (Invitrogen) and 2 uL of the DNA sample.
PCR was performed with an initial cycle at 94 C for 2 min; 40 cycles at 94 C for 1 min; 62 C
for 30 s and 72 C for 1 min; The final extension was 72 C for 7 min; 10 L of the amplification
product was subjected to horizontal electrophoresis in agarose gel with 2 mL 1.5% loading buffer
6x 1x TAE buffer at 110V for 60 min. The gel was stained with 0.5 ug / mL ethidium bromide for
10 min and visualized on a UV light transilluminator. Finally, the images were documented with
BioRad gel fotodocumentador ChemiDoc XRS + model.
The PCR products were purified by using the QIAquick PCR Purification Kit (Qiagen, Hilden,
Germany)). . The sequencing of the amplified fragments was carried out using the kit v3.1 Cycle
Sequencing BigDye Terminator Kit The final reaction volume was 15 uL containing 4 of RR 100
uL BigDye; 2 mL of 5X buffer BygDye; 5 uL molecular grade water; 2 mL of 2 mM and first 2 mL
of purified PCR product. The thermocycler was programmed for initial denaturation step of 94
C for 3 min; followed by 25 cycles of 96 C for 10 s; 50 C for 5 s and 60 C for 4 min. The
sequencing products were purified as technical specifications Centri Sep Kit (Princeton
Separations), then 3500XL sequencer used (Applied Biosystems). The consensus sequences were
obtained through the analysis of sense and antisense sequences of each PCR fragment of 336
bp sequences obtained, using the program BioEdit see. 7.0.9.0 and SeqMan II (DNASTAR Inc.)
software.
Sequence analysis
Sequences were aligned with CLUSTAL X see program. 2.1, along with other previously reported
sequences in GenBank corresponding to Brazil and Peru, in addition to a sequence of Aedes
albopictus, obtained by Costa, et al., 2006 was used as outgroup. To find the values of genetic
diversity (H) and nucleotide (Pi) DNAsp see the program was used. 5.10.01. Phylogenetic analysis
was performed haplotypes found using MEGA program view. 5, with the algorithm Neighbor
Joining (NJ), was made by building a tree with a bootstrap autorplicas 1000, using as outgroup
to Aedes albopictus. The analysis of intraspecific haplotype phylogeny using networks was made
with the Network view program. 4.6.1.0 Median joining the algorithm.
FINDINGS
ND4 gene sequences 49, each of 336 bp, 321 conserved sites, 15 variable positions, all
informative and synonymous mutations were obtained. By analyzing the sequences found for
Peru five haplotypes were found, in Figure 1 the distribution of each in relation to the points
that were collected shown.
DISCUSSION
The discovery of five haplotypes grouped into two lineages and distributed in eleven regions of
Peru described in this study is consistent with previous studies reporting the presence of three
haplotypes, two of them in the Piura region, and one present in Lima and Loreto (Iquitos).
Similarly, another study in 2005 indicated that the genetic variability of Aedes aegypti in America
was 0,82; and the value of nucleotide, 0.02 diversity. Meanwhile, the presence in Peru of two
lineages of Aedes aegypti, consistent with previous studies that divide the population of Aedes
aegypti in two large groups, the coastal variant and the mountain-forest variant. The existence
of these two lineages would be explained by the results of another study that said the
introduction of at least two genetic lineages of Aedes aegypti to Peru; This research to Bracco,
et al adds. who indicate the presence of only two genetic lineages of Aedes aegypti throughout
the Americas. The difference found enters both lineages in nine mutations, is similar to a study
that indicated the existence of three haplotypes, the first of them present in Lima and Iquitos,
which was far from a haplotype present in Piura for four mutations, and a third haplotype (also
in Piura) in ten mutations.
The genetic variability of Aedes aegypti in the geographic regions of Peru is due to active
migration performing female Aedes aegypti looking for where to lay eggs; however, this
migration has geographical and climatic constraints. Then, the genetic variability of Aedes
aegypti would also be explained by a passive or forced migration mediated by human activity,
expressed in its commercial activities and transportation systems. This type of migration
additionally explain the existence of the same haplotype in markedly distant geographic regions,
such as the cases of Lima and Iquitos. Places where previous studies have also indicated that
share a common haplotype.
Previous studies have indicated the existence in Peru of two variants of Aedes aegypti, the
coastal variant and the mountain-forest variant, separated by the Andes, stating that this would
serve as a natural barrier that would prevent the spread of this vector. Our results show that
this natural barrier has been compromised, then found one haplotype on both sides of the ridge.
This fact, as explained above lines, it should be passive vector migration mediated by human
activity. Consequently, we can not use, to group haplotypes found, the names of variants and
coastal sierra-rainforest.
While the mitochondrial gene is used for the analysis intraspecific Aedes aegypti, it has recently
been reported in this species the presence of nuclear pseudocopias (NUMT) which may alter the
divergence inferred if they are either analyzed as mitochondrial copies. In this regard, it will be
very useful to use in future studies, nuclear markers, in addition to the mitochondrial marker for
discriminating the possibility of NUMT.
The main limitation of our study was that it the time taken for the collection of specimens was
too broad (2006-2012), with which there is a possibility that the variability in the geographical
areas has been changed. Nevertheless, we believe that our study is a contribution to the
development of research designed to evaluate the interaction or association Aedes aegypti with
serotypes circulating dengue, with the resistance of this vector to insecticides, and their levels
dispersion. Thus contributing to the development of intervention measures for the prevention
and control of dengue.
In conclusion, we have described five haplotypes of Aedes aegypti, grouped into two lineages,
in eleven endemic areas of dengue in Peru. This variability can be explained by the active
migration of the vector and its passive migration mediated by human activity both. Similarly,
due to passive migration of Aedes aegypti should reconsider the traditional classification of
coastal and mountain-forest variants, as found one haplotype in both regions.
Bibliographic references
El Aedes aegypti es el vector de los cuatro serotipos del virus de dengue (DENV), se
encuentra en casi 100 pases tropicales y se calcula que 2,5 billones de personas
habitan en reas donde existe el riesgo de transmisin de la epidemia . Es
considerado como uno de los vectores ms eficientes en la transmisin del dengue
debido a que es altamente antropoflico .
En el Per, el Aedes aegypti fue detectado por primera vez en el ao 1852, habra
ingresado por la frontera norte desde la regin de Guayaquil (Ecuador),
extendindose progresivamente a lo largo de la costa del Per. En 1938, los
resultados de una encuesta nacional mostraron que 11 de los 24 departamentos del
Per estaban infestados con Aedes aegypti , anuncindose su erradicacin para
1958, como resultado de la intensa campaa de control ejecutada por el Ministerio
de Salud del Per, con el apoyo de la Organizacin Panamericana de la Salud . Sin
embargo, una reinfestacin de Aedes aegypti fue detectada en Loreto en 1984, a
partir de la cual se expandi a varios departamentos del Per. En el 2001 se
inform de su presencia en la ciudad de Lima y esta se asoci, en 2005, a una
epidemia de dengue en el distrito de Comas . En el 2012, la Direccin General de
Epidemiologia del Per inform que el Aedes aegypti estaba presente en 17
departamentos del Per y que el DENV circulaba en 15 de ellos .
EL ESTUDIO
Un fragmento de 377 pares de bases del gen mitocondrial ND4 de Ae. aegypti fue
amplificado mediante PCR, el volumen de la reaccin fue de 25 L, con una
concentracin final de Buffer PCR 1x (Invitrogen), MgCl 2 3 mM (Invitrogen), mix de
dNTPs 400 M (Applied Biosystems), 0,4 M de cada primer reportado
previamente 1 U/ L de Taq Polimerasa (Invitrogen) y 2 L de la muestra de ADN.
La PCR fue realizada con un ciclo inicial a 94 C por 2 min; 40 ciclos a 94 C por 1
min; 62 C por 30 s y 72 C por 1 min; la extensin final fue de 72 C por 7 min;
10 L del producto de amplificacin fue sometido a electroforesis horizontal en gel
de agarosa al 1,5% con 2 L del buffer loading 6x en buffer TAE 1x a 110v por 60
min. El gel fue teido con 0,5 g/mL de bromuro de etidio por 10 min y visualizado
en un transiluminador de luz UV. Finalmente, se documentaron las imgenes con
fotodocumentador de geles BioRad modelo ChemiDoc XRS+.
Los productos de PCR fueron purificados mediante la utilizacin del QIAquick PCR
Purification Kit (Qiagen, Hilden, Germany) . La secuenciacin de los fragmentos
amplificados se llev a cabo utilizando el kit BigDye Terminator v3.1 Cycle
Sequencing Kit. El volumen final de la reaccin fue de 15 L conteniendo 4 L de
RR 100 BigDye; 2 L de buffer 5X BygDye; 5 L agua grado molecular; 2 L del
primer 2 mM y 2 L de producto de PCR purificado. El termociclador se program
para un paso de desnaturalizacin inicial de 94 C por 3 min; seguido por 25 ciclos
de 96 C por 10 s; 50 C por 5 s y 60 C por 4 min. Los productos de secuenciacin
fueron purificados segn especificaciones tcnicas del Kit Centri Sep (Princeton
Separations) , utilizndose luego el secuenciador 3500xL (Applied Biosystems). Las
secuencias consenso se obtuvieron a travs del anlisis de las secuencias sentido y
antisentido de cada fragmento de PCR obtenindose secuencias de 336 pb,
mediante el uso del programa BioEdit ver. 7.0.9.0 y el software SeqMan II (Dnastar
Inc).
ANLISIS DE SECUENCIAS
Las secuencias fueron alineadas con el programa CLUSTAL X ver. 2.1, junto con
otras secuencias previamente reportadas en el GenBank que corresponde a Brasil y
Per, adems de una secuencia de Aedes albopictus, obtenida por Costa, et al.,
2006 (15) que se utiliz como grupo externo . Para hallar los valores de diversidad
gentica (H) y nucleotdica (Pi) se utiliz el programa DNAsp ver. 5.10.01. El
anlisis filogentico de los haplotipos encontrados se realiz mediante la utilizacin
del programa MEGA ver. 5, con el algoritmo de Neighbor Joining (NJ), se hizo
mediante la construccin de un rbol con un bootstrap de 1000 autorplicas,
utilizando como grupo externo a Aedes albopictus (16). El anlisis de filogenia
intraespecfica utilizando redes de haplotipos fue realizado con el programa Network
ver. 4.6.1.0 con el algoritmo Median joining.
El anlisis filogentico de los haplotipos determin que ellos se encuentran
agrupados en dos linajes. El primer linaje incluy a los haplotipos 1, 3 y 5, el
haplotipo 1 estuvo separado por tres mutaciones del haplotipo 3 y el haplotipo 5
estuvo separado del haplotipo 3 por una mutacin. El segundo linaje, separado del
primero por nueve mutaciones, incluy los haplotipos 2 y 4; el haplotipo 2 estuvo
separado del haplotipo 4 por tres mutaciones (Figura 2, Anexo 2).
DISCUSIN
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Sanit Panam. 1958;45:375-86. [ Links ]
10. Lima Jnior RS, Scarpassa VM. Evidence of two lineages of the dengue vector
Aedes aegypti in the Brazilian Amazon, based on mitochondrial ADN ND4 gene
sequences . Genet Mol Biol. 2009;32(2):414-22. [ Links ]
15. NCBI [base de datos en Internet]. Bethesda: National Center for Biotechnology
[citado el 1 de septiembre del 2012]. Costa MCV, Paduan KS, Ribolla PEM.
Temporal analysis of mitochondrial gene (NDH4) in Aedes aegypti populations from
endemic and non-endemic areas in Brazil. Acceso: EF153761.1 [aprox. 2 pantallas].
Disponible
en: http://www.ncbi.nlm.nih.gov/nucleotide/119656928?report=genbank&log$=nu
cltop&blast_rank=1&RID=48KUDZE301N [ Links ]
17. Costa-da-Silva, AL; Capurro ML, Bracco JE. Genetic lineages in the yellow fever
mosquito Aedes (Stegomyia) aegypti (Diptera: Culicidae) from Peru . Mem Inst
Oswaldo Cruz. 2005;100(6):539-44. [ Links ]