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Review TRENDS in Cell Biology Vol.17 No.

Rings, bracelets, sleeves, and


chevrons: new structures of
kinetochore proteins
Trisha N. Davis1 and Linda Wordeman2
1
Department of Biochemistry, University of Washington, Seattle, WA 98195, USA
2
Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA

Electron microscopy has recently revealed striking the name velcro to emphasize that this type of model
structural orderliness in kinetochore proteins and invokes many weak interactions with the MT, analogous
protein complexes that associate with microtubules. to the many hooks and loops of VelcroTM that only together
In addition to their astonishing appearance and intrinsic make a robust connection. However, unlike Velcro, the
beauty, the structures are functionally informative. The kinetochore attachment is dynamic. Any diffusion that
Dam1 and Ndc80 complexes bind to the microtubule positions additional binding sites near the microtubule
lattice as rings and chevrons, respectively. These struc- is favored by the increased affinity generated [2]. In the
tures give insight into how the kinetochore couples to other model, the kinetochore encircles the microtubule and
dynamic microtubules, a process crucial to the accurate cannot be pulled off because the MT end forms some type of
segregation of chromosomes. HURP and kinesin-13 a structural barrier. A ring could satisfy either model, but
arrange tubulin into sleeves and bracelets surrounding the latter model requires a ring encircling the MT. More-
the microtubule lattice. These structures might reflect over, the depolymerizing and polymerizing ends must be
the ability of these proteins to modulate microtubule wide enough to prevent a ring that fits around a MT from
dynamics by interacting with specialized tubulin con- coming off. Depolymerizing MTs are known to have curling
figurations. In this review, we compare and contrast the protofilaments (Figure 1b), which would push a ring along
structure of these proteins and their interactions with as proposed by the conformational wave model [3]. Poly-
microtubules to illustrate how they attach to and modu- merizing MTs seem to be wider at the end and could
late the dynamics of microtubules. prevent a ring from coming off [4] (Figure 1a).
Two kinetochore constituents have been identified that
Introduction can form rings around microtubules, the Dam1 complex
The kinetochore is the supramolecular structure that from budding yeast (also named the DASH complex)
attaches chromosomes to microtubules (MTs). During (Figure 2a) and higher eukaryotic kinesin-13s (Figure 2b)
mitosis it must maintain a floating grip on dynamic micro- [5–8]. The rings are fundamentally different in that kinesin-
tubule ends to achieve accurate chromosome segregation. 13 stabilizes rings of tubulin protofilaments (Figure 1c),
Similar challenges are faced by cells when they are splicing whereas the Dam1 complex comprises the rings itself. Elec-
RNA, polymerizing DNA or holding together replicating tron microscopy (EM) has revealed structures of two other
chromosomes. In these cases, enzymes that fully or par- microtubule-binding proteins. Hematoma upregulated
tially enclose the nucleic acid polymer enable processivity, protein (HURP), a mitotic spindle protein, promotes the
while exhibiting structural flexibility and weak or chan- formation of a novel polymer of tubulin that surrounds a
ging substrate affinity. Does the kinetochore use a similar microtubule like a sleeve (Figure 2c) [9]. Finally, the Ndc80
mechanism to hold onto a microtubule? kinetochore complex does not form rings but instead dec-
The kinetochore maintains attachment to MTs, even as orates microtubules as chevrons (Figure 2d) [10]. Here, we
thousands of tubulin subunits are added or removed. discuss the evidence that these rings, bracelets, sleeves and
Higher eukaryotic spindles have multiple microtubules chevrons enable kinetochore attachment to a dynamic
per kinetochore and therefore could let go of one or more microtubule, and we point out questions that remain to
microtubules while holding onto others. However, in bud- be resolved.
ding yeast (Saccharomyces cerevisiae), each kinetochore
binds to the tip of one microtubule and remains attached The Dam1 complex: rings around microtubules
whether the microtubule is polymerizing or depolymeriz- The Dam1 complex is an excellent candidate for forming
ing [1]. These attachments are load-bearing, as the kine- attachments because it oligomerizes to form rings around
tochore carries the chromosome with it. Two types of model microtubules (Figure 2a). A single complex is a heterode-
can explain this behavior. One is a biased diffusion model, camer with one copy of each of ten proteins, has a molecular
also called a thermal ratchet or molecular ‘velcro’. We use weight of 204 kDa and is 70 Å  105 Å [7,8]. The hetero-
Corresponding author: Davis, T.N. (tdavis@u.washington.edu).
decamers fit together longitudinally to form the ring
Available online 4 September 2007. around a MT (Figure 2a). The rings apparently do not
www.sciencedirect.com 0962-8924/$ – see front matter ß 2007 Elsevier Ltd. All rights reserved. doi:10.1016/j.tcb.2007.08.001
378 Review TRENDS in Cell Biology Vol.17 No.8

Figure 1. Microtubule structures. (a) Microtubules assemble from a sheet of 13 protofilaments, which roll up to form a tubular structure. The helical pitch intrinsic to the
polymerizing tubulin dimers gives rise to a noticeable seam in the microtubule that has been visualized in the electron microscope. The fundamental unit of microtubule
assembly is the ab-tubulin dimer (box). (b) Individual protofilaments peel apart during microtubule disassembly. The outwardly curved protofilaments, which form
naturally during disassembly as a result of conformational change in the tubulin dimer triggered by the hydrolysis of bound GTP, can be stabilized by the motor domains of
kinesin-13 family members (green). In the presence of ATP the disassembly of microtubules is promoted by kinesin-13s because of their ability to form a high-affinity
complex with curved protofilaments. (c) The products of microtubule disassembly in vitro can be individual tubulin dimers or curved protofilaments of various sizes
depending on the buffer constituents. These protofilament rings can be stabilized by motor domains of kinesin-13 family proteins (green) in the presence of non-
hydrolyzable ATP. This promotes a high affinity association of the motor domain, preferentially with curved rather than straight protofilaments. (d) Sheets of tubulin that
form in the presence of HURP and preformed microtubules consist of antiparallel protofilaments similar to zinc sheets with the exception that the luminal surfaces are all on
the same side of the sheet. It is this surface (the back side of the sheet shown here) that interacts with HURP bound to microtubules. (e) Microtubules assembled in the
presence of zinc ions will form antiparallel, interdigitating straight protofilament sheets (sometimes referred to as macrotubes). Neighboring protofilaments show opposite
surfaces; a protofilament showing what would be the luminal surface in a MT (dark) is neighbor to protofilaments showing what would be the outer surface in a MT (light).
These structures are useful for structural studies and as unusual substrates for motor activity.

contain tubulin, although that has not been finally or added to a microtubule. Moreover, like the kinetochore,
resolved. When seen end-on by EM, the Dam1 ring has the Dam1 complex changes the dynamics of the plus end in
approximately 16 subunits (presumably 16 heterodeca- ways that promote lengthening [14].
mers) surrounding the 13 protofilaments of the microtu- Genetic evidence also supports the role of the Dam1
bule [7]. Scanning transmission EM measures the mass of complex in kinetochore attachment to microtubules. All
the ring to be equivalent to 25 heterodecamers [11]. Rings the components of the Dam1 complex are essential in
are difficult to detect in vitro in the absence of microtu- budding yeast. Temperature-sensitive mutants in Dam1
bules, suggesting that microtubules might guide the complex proteins show defects in attachment of chromo-
assembly of these structures. The lack of 1:1 stoichiometry somes to the spindle and fail to biorient sister chromatids
between the number of Dam1 complexes and the number of [15,16]. Phosphorylation of Dam1 on a single residue by
protofilaments implies that Dam1 does not bind tightly to Mps1 kinase is required to target kinetochores to the plus
one part of the tubulin dimer and thus could have a loose end of microtubules in budding yeast [17]. If the phos-
grip that allows free movement along the microtubule [12]. phorylation site is mutated, kinetochores are attached
Recent results suggest that flexible tethers on two of the laterally to MTs by the Dam1 complex, providing
proteins (Dam1 and Duo1) bind to the microtubule [11]. additional evidence that Dam1 is required in vivo for stable
The Kd of the entire Dam1 complex for microtubules is attachment of kinetochores to the plus ends of MTs. Sur-
reported to be 200 nM [7]. prisingly, accurate chromosome segregation can still occur
Recombinant Dam1 complex attaches to MTs and even with a mutated Dam1 phosphorylation site.
reproduces many of the behaviors of the kinetochore. It Although it is tempting to propose an important role for
can bind to depolymerizing microtubule ends [13] and stay the ring, it has not been proven to be the physiologically
attached to the end of polymerizing or depolymerizing important organization of the Dam1 complex. In yeast, the
microtubules even against a force of up to 3 pN [12]. Dam1 complex has been measured by immunoblot analysis
The level of force is similar to that generated by ATP- to be present at 650 copies per cell, just enough for one 16-
driven motors that move organelles inside cells. Thus, it mer ring around each of 32 kinetochore microtubules [8]. In
can form physiologically relevant load-bearing tip attach- fact, fluorescence microscopy measures 16–20 Dam1 com-
ments even as thousands of tubulin subunits are removed plexes in each budding yeast kinetochore at metaphase
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Review TRENDS in Cell Biology Vol.17 No.8 379

depolymerization [18], a time when a ring would seem to


be most important. The nature of the Dam1 structure in
cells remains to be determined and could be altered by
binding to the Ndc80 complex and other kinetochore com-
ponents.
Another question is what performs the function of Dam1
in other organisms. In fission yeast (Schizosaccharomyces
pombe), the Dam1 complex is required only if kinesin-8 is
absent, suggesting that kinesin-8 performs a redundant
function [20]. Kinesin-8 is a plus end-directed motor that
acts as a length-dependent depolymerase [21]. Its ability to
substitute for the Dam1 complex is especially interesting
considering that, evolutionarily, the kinesin-8s are the
next closely related clade to the kinesin-13s (see below)
and might have mechanistic similarities [21–23]. Homo-
logs of the Dam1 complex have not been found in other
eukaryotic cells but lack of sequence homology does not
preclude a structural and functional match. Thus, great
interest accompanied the discovery that kinesin-13 forms
rings around microtubules.

Kinesin-13: bracelets of tubulin


GDP–tubulin rings have long been observed as products of
microtubule disassembly [24]. There are several enzymes
that bind preferentially to protofilament rings rather than
to straight protofilaments in the microtubule lattice. This
promotes the transition from the polymerizing to the
depolymerizing state (Figure 1b,c), thus serving as a con-
trolled method of rapidly disassembling microtubules. The
most mechanistically well-characterized of these enzymes
is the kinesin-13 family of microtubule motors, which
includes mammalian MCAK and Drosophila melanogaster
Klp10A (reviewed in Ref. [25]). The core motor domain of
kinesin-13 proteins actively promotes the formation of
protofilament rings from assembled, stabilized MTs in
the presence of non-hydrolyzable ATP analogs, such as
50 -adenylyl-beta,gamma-imidodiphosphate (AMP-PNP).
Relative to the motile kinesins, the MT binding interface
of the kinesin-13 prefers to form a high-affinity complex
Figure 2. Rings, bracelets, sleeves and chevrons formed by kinetochore proteins. with a curved protofilament than with a straight protofila-
(a) Recombinant Dam1 complex bound to paclitaxel-stabilized microtubule. ment as would be found in the intact MT lattice [26,27].
Electron micrographs of negatively stained material. (b) MCAK stabilized tubulin
bracelets. Paclitaxel-stabilized microtubule in the presence of recombinant MCAK The opportunity to form this tight complex in the presence
(core motor domain plus 64 residues of the neck domain) and AMPPNP. An of AMP-PNP (which locks the motor in the ATP-bound
electron micrograph of negative stained material. (c) Recombinant HURP was state) is available only at the MT ends, where the proto-
incubated with tubulin in the presence of GTP. Vitrification by quick-freezing was
followed by freeze-drying and then unidirectional metal shadowing before filaments can be bent outward. No further catalytic
cryoelectron microscopy. The red box indicates a region of the microtubule disassembly is possible because the motor cannot hydro-
covered with a sleeve. (d) Recombinant Ndc80 complex bound to microtubules
lyze the analog. This results in the formation of rings
stabilized with GMPCPP. (i) An electron micrograph of negative stained material;
(ii) a trace of the EM image to depict the chevrons. Reproduced with permission with stoichiometrically bound kinesin-13 motor domains
from Refs (a) [8], (b) [5], (c) [9] and (d) [10]. The scale bars represent 50 nm. (Figure 1c).
Recently two reports have described another novel
[18]. The quantification is consistent with a single ring property of kinesin-13 motors. When added to stabilized
around each kinetochore microtubule, but a ring has never MTs at high stoichiometry in the presence of AMP-PNP,
been seen near the plus end of the microtubule even when they promote the assembly of curved longitudinal proto-
examined by electron tomography with a resolution of filaments that assemble around the MT, forming helical
5 nm. Instead thin fibrils of unknown composition are rings or ‘bracelets’ (Figure 2b) that consist of a protofila-
seen connected to both the outside and inside of a micro- ment spiral plus (probably) attached kinesin-13 motors. In
tubule [19]. The ring might be sensitive to freeze substi- some cases the structure is of such high order that strong
tution and therefore not visualized by these methods. At diffractions at 80 Å (the length of one tubulin dimer) and
anaphase, each kinetochore contains only 10–11 Dam1 160 Å (the pitch of the spiral) are obtained [5]. These rings
complexes, suggesting that a 16-mer ring is not needed have been proposed to be the higher eukaryotic counter-
during anaphase when microtubules undergo rapid part of the Dam1 rings. However, the rings are seen only in
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380 Review TRENDS in Cell Biology Vol.17 No.8

the presence of AMP-PNP (as opposed to other sleeve is arranged in antiparallel protofilaments with P2
nucleotides), which is not found in cells. Furthermore, symmetry (Figure 1d): every protofilament has the same
the ‘ring’ part of the spiral is actually a curved protofila- side out, normally the outer surface (the outer surface can
ment of tubulin dimers that remain longitudinally associ- be distinguished from the luminal surface in vitro because
ated, possibly by virtue of the artificial stabilization of the the outer surface binds kinesin heads). By contrast, in Zn2+
microtubule by taxol or GMP-CPP. The symmetry more sheets of tubulin, the protofilaments exhibit P21 symmetry
closely matches that of the underlying microtubule, which (Figure 1e): the protofilaments are antiparallel, but adjacent
might preclude the loose attachment required to maintain filaments expose alternating outer and luminal surfaces.
a floating grip on a dynamic microtubule and which hints Similarly to the kinesin-13 bracelets, the HURP protein is
at an ordered interaction between the bound kinesin-13 located between the surface of the MT and the wrapped
motor domains on the longitudinal protofilament spiral sheet. HURP has regions of positive charge that are postu-
and the wall of the microtubule lattice. Finally, recent lated to interact with MTs and protofilaments in an oriented
tomography of the mammalian kinetochore found no rings manner. An intriguing difference is that the luminal side of
[28]. antiparallel protofilaments is interacting with the MT sur-
Although kinesin-13 might not provide the higher face-bound HURP. Both HURP and kinesin-13s seem to
eukaryotic version of the Dam1 ring, the discovery of the favor the formation of these templated structures, in con-
ring is still informative. The rings can be induced with core trast to simple decoration of the surface of the MT. Both
kinesin-13 motor domain alone [6] or core motor plus neck these proteins might actively participate in the structural
[5]. The motor seems to mediate an association between the modulation of the MT lattice in conjunction with cross-
protofilament spiral and the MT surface, implying that linking to other tubulin structures.
there are two opposed MT binding sites on the core motor The sleeves are unlikely to attach the kinetochore to
domain. Recent studies on D. melanogaster Klp10A [6] microtubules. Although HURP associates with kinetochore
suggest that two motor domains, one bound to the proto- MTs, it does not seem to be part of the kinetochore but
filament and one bound to the MT lattice, consecutively instead forms a gradient or comet tail extending out from
interact with each other to mediate ring formation. One the kinetochore. Because HURP stabilizes kinetochore
problem with this hypothesis is that the dimerization MTs [32–34], it is attractive to hypothesize that the sleeve
domains are not present in the core motor domain, which forms on kinetochore microtubules and impedes depoly-
has been shown to be a monomer in solution [29,30]. merization. HURP might use its MT-stabilizing properties
However, weak interactions between motors might be to promote congression of chromosomes to the metaphase
templated by the MT lattice. Such unexpected core motor plate and antagonize the MT destabilizing effect of kine-
domain dimerizations have been seen before, particularly tochore-associated kinesin-13s.
with proteins isolated from cold-blooded animals such as
Drosophila and squid [31]. Alternatively, as is thought to The Ndc80 complex decorates microtubules as
occur with mammalian kinesin-13 family member MCAK, chevrons
one motor might crosslink the protofilament to the MT Two reports recently showed that other components of the
from either side. kinetochore besides the Dam1 complex bind MTs: the
There are several positively charged residues that are Ndc80 complex and KNL-1 (known as Spc105 in budding
specifically conserved in the kinesin-13 depolymerases yet yeast). The Ndc80 complex contains four proteins: Ndc80
are located on the side of the motor domain opposite the (also known as Hec1 in humans and Tid3 in budding yeast),
known MT binding domain. This suggests an alternative Nuf2, Spc24 and Spc25. The complex is a long coiled-coil
hypothesis in which kinesin-13s have two distinct MT rod connecting two globular domains [35,36]. The C-term-
binding domains within the core motor. The canonical inal regions of Spc24 and Spc25 bind tightly to form the
kinesin motor MT binding domain is known to bind tightly domain facing the inner kinetochore [37], and the N-term-
to curved protofilaments in the presence of non-hydrolyz- inal regions of Ndc80 and Nuf2 form the domain facing the
able ATP analogs. The exposed side of the motor domain MT. Until recently, the N-terminal domain was thought to
might also be capable of interacting with the surface of the interface with the Dam1 complex and not bind microtu-
assembled MT in a relatively ordered manner. Although it bules [38], but two reports have now shown that the Ndc80
is unclear whether the rings are functionally relevant, complex binds MTs directly [10,39]. The affinity of the
they do illustrate the ability of the MT lattice and entire complex for MTs is low, with an apparent Kd of
MT binding proteins to template potentially informative 3 mM, and the affinity is enhanced by other kinetochore
structures. proteins, KNL-1 and the Mis12 complex [10]. Together, the
Ndc80 complex, KNL-1 and the Mis12 complex showed
HURP: formation of a tubulin sleeve half-maximal binding at 750 nM polymerized tubulin. The
Another example of the ability of the MT to template novel N-terminal region of Hec1 (the human ortholog of Ndc80) is
structures is the sleeve formed by HURP, a component of the a calponin-homology domain similar to that found in the
spindle assembly pathway regulated by the small GTPase EB1 MT tip-binding protein [39]. Curiously, as seen by
Ran and importin-b [32,33]. Cryoelectron micrographs of cryoEM, EB1 binds only to the seam of MTs (seen in
recombinant HURP bound to MTs show a novel polymer of Figure 1a,b) [40]. By contrast, the Ndc80–Nuf2 N-terminal
tubulin forming a sleeve around a normal MT [9] (Figure 2c). domain and the entire Ndc80 complex bind all round the
The HURP is on the inside of the sleeve between the MT and MT [10,39]. Binding curves plateau at 1.5 Ndc80–Nuf2 N-
the HURP-induced tubulin polymer. The tubulin in the terminal domains bound per tubulin dimer instead of the 1
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Review TRENDS in Cell Biology Vol.17 No.8 381

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