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PII: S1464-343X(18)30048-7
10.1016/j.jafrearsci.2018.02.
DOI: 016
Please cite this article as: Fathy Abdalla, Ramadan Khalil, Potential effects of
groundwater and surface water contamination in an urban area, Qus City, Upper
Egypt, Journal of African Earth Sciences (2018), doi: 10.1016/j.jafrearsci.2018.02.016
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ABSTRACT
The potential effects of anthropogenic activities, in particular, unsafe sewage disposal
practices, on shallow groundwater in an unconfined aquifer and on surface water were evaluated
within an urban area by the use of hydrogeological, hydrochemical, and bacteriological analyses.
Physico-chemical and bacteriological data was obtained from forty-five sampling points based
on33 groundwater samples from variable depths and 12 surface water samples. The pollution
sources are related to raw sewage and wastewater discharges, agricultural runoff, and wastewater
from the nearby Paper Factory. Out of the 33 groundwater samples studied, 17 had significant
- - 2-
concentrations of NO3 , Cl and SO4 , and high bacteria counts. Most of the water samples from
the wells contained high Fe, Mn, Pb, Zn, Cd, and Cr. The majority of surface water samples
- -
presented high NO3 concentrations and high bacteria counts. A scatter plot of HCO 3 versus Ca
indicates that 58 % of the surface water samples fall within the extreme contamination zone,
while the others are within the mixing zone; whereas 94 % of groundwater samples showed
showed that all measured surface and groundwater samples contained Escherichia coli and total
coliform bacteria. A risk map delineated four classes of contamination, namely, those sampling
points with high (39.3 %), moderate (36.3 %), low (13.3 %), and very low (11.1 %) levels of
contamination. Most of the highest pollution points were in the middle part of the urban area,
which suffers from unmanaged sewage and industrial effluents. Overall, the results demonstrate
that surface and groundwater in Qus City are at high risk of contamination by wastewater since
the water table is shallow and there is a lack of a formal sanitation network infrastructure. The
product risk map is a useful tool for prioritizing zones that require immediate mitigation and
monitoring.
1. INTRODUCTION
Hydrogeological and hydrogeochemical characteristics of groundwater can be adversely
(Jeong, 2001; Foppen, 2002; Powell et al., 2003; Ellis and Rivett, 2007). In particular, human
activities such as the installation of sewer systems can disturb groundwater levels in shallow
aquifers that are highly vulnerable to contamination by causing a significant drop of the water
level at the local scale due to the abstraction of large quantities of groundwater. Consequently,
water laden with pollutants from raw sewage disposal flows toward the low-lying parts of a city,
and this situation may be exacerbated after pumping is stopped, which will cause a further rise in
the groundwater level. Deterioration in both the quantity and quality of groundwater represents a
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5.5 and 6.5 billion m (BCM)/yr, but only 2.97 BCM is subject to treatment processes. Out of
this treated portion, about 0.7 BCM/yr is reused for agriculture purposes, of which 0.44 BCM
undergoes primary treatment and the rest (0.26 BCM) is subjected to secondary treatment
In the study area, the sewage network to collect and treat sewage is under construction, and
therefore, sewage is currently disposed of and collected in underground sewage rooms, which
have been constructed to be in direct contact with groundwater. No isolating surfaces or lined
beds are present to prevent the sewage water and other contaminants from reaching and mixing
with groundwater. In some areas of the city, sewage is discharged directly over the ground or into
canals and drains (Fig. 1). As sewage water infiltrates into the shallow aquifer, pathogenic
organisms such as bacteria and viruses can easily move within the aquifer and contaminate the
groundwater. In the study area, wastewater discharges include domestic raw sewage, agricultural
nutrients, toxic metals, and organic compounds (Gardner, 1997; Geriesh et al., 2004; USEPA, 2004),
which can migrate downward directly to the groundwater. The human faecal material is comprised of
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a significant portion (~25%) of bacteria and contains approximately 3×10 coliform bacteria/100 mL;
these microbes are diverse with respect to their ability to travel through the soil matrix (DeBorde et
Escherichia coli) and total coliform bacteria, as pathogenic indicator species, do not necessarily
themselves cause disease, but they signal that the water is contaminated with disease-causing
pathogens (Macler and Merkel, 2000; APHA, 2012). Total coliform counts in contaminated
water are usually 10-times higher than faecal coliform counts. The threat to public health due to
the transmission of pathogenic bacteria from sewage systems to groundwater has been reported
worldwide. Many diseases may be caused by bacteria, such as diarrhoea, dysentery, cholera, and
typhoid fever (DeBorde et al., 1998; Powell et al., 2003; Lerner and Harris, 2009). To avoid or
must be placed at a safe distance from contamination sources (Table 1); this distance depends
upon the hydraulic properties of the soil type, such as hydraulic conductivity and infiltration rate.
Table 1. Table showing the recommended minimum distance between a groundwater well and
agricultural runoff, and industrial effluents contain a complex mixture of inorganic compounds
that are potentially harmful to groundwater quality in the area. These sources may include nitrate
-
(NO3 ) and potentially toxic heavy metals such as Pb, Cd, Zn, Fe, Mn and Cr in high
concentrations. Typical sources of nitrate in groundwater are mainly related to agricultural and
domestic wastewater discharges (Andersen and Kristiansen, 1983; Liu et al., 2005). Bacterial
decomposition of organic matter present in sewage and animal waste is a common source of
nitrate to water. Nitrate contents above the World Health Organization (WHO) guidelines may
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cause health problems for infants, as nitrate interferes with the blood’s ability to transport oxygen
Trace elements in groundwater are typically present in small quantities (˂1 mg/L). According
to the carcinogenic classifications of heavy metals in drinking water by the International Agency
for Research on Cancer (IARC, 2012), Cd, Cr, and Pb are classified as carcinogenic substances,
while Zn, Fe, and Mn are classified as non-carcinogenic. Additional health impacts of heavy
metals in drinking water have been reported by the U.S. Environmental Protection Agency
(USEPA, 1994) and WHO (WHO, 2008). Furthermore, various organic compounds may be
found in household discharges, including grease, detergent wastes, cleaning solvents, oil, and
pharmaceutical drugs. The presence of clay–silt and fill deposit layers covering an aquifer may
provide some protection because of their strong adsorption ability (Gu et al., 2010).
In the study area, the subsurface infiltration of a considerable amount of raw sewage water
into the ground has resulted in waterlogged areas and groundwater pollution. An assessment of
the hydrochemical and bacteriological characteristics of the surface and groundwater resources
was carried out to examine the adverse impacts of wastewater disposal in the area. Our objective
here was to investigate the interaction of wastewater with surface and shallow groundwater
resources in the study area and to identify potential contamination from anthropogenic sources.
This was achieved by quantifying the different types of pollutants and surveying the possible
sources of contamination, which included discharges of raw sewage, irrigation return flows, and
The study area lies in the southern part of Upper Egypt along the Nile between Qena and
Luxor (Fig. 1); between latitudes of 25°50ʹ and 25º 57ʹ N and longitudes of 32°45ʹ and 32°48ʹ E.
The area is site to many human-related activities, where the principal land use is a mixture of
residential and agricultural uses. The region is characterized by cultivated land of the Nile
floodplain ranging in elevation between 70.5 and 79.6 m (mamsl (meters above mean sea level)
(Abdalla et al., 2009). The study area is located in the arid zone, which is characterized by arid
and hot weather conditions. The temperature varies from 23 °C in winter to 44 °C in summer.
Rainfall is very rare and not significant throughout the year; however, random flash showers
sometimes occur during winter. The mean annual value of rainfall is ˂5 mm/yr, while the
The geological sequences in the study area include sedimentary rocks belonging to the Upper
Cretaceous, the Tertiary, and the Quaternary. The Tertiary and Quaternary deposits overly
Precambrian basement rocks (Fig. 2). According to Said (1981) and Omran et al. (2001), the
oldest exposed sedimentary rocks are of Eocene age and composed of low-fissured limestone
with clay and/or silt intercalations (Thebes Formation). The Pliocene deposits formed as a result
of aggradations and degradations of Nile Valley material (Ezz El Deen et al., 2014). The upper
part of the Paleocene deposits is known as the Dakhla Formation, and Tarawan Chalk, they
composed of shale and marl is present where the lower part is composed of Esna Shale. The
Upper Cretaceous deposits include the Duwi Formation (phosphates) and the Dakhla Formation
(sand, shale, marl, and limestone) (Ezz El Deen et al., 2014), while the recent Nile deposits of
Quaternary age are composed from Pleistocene (sand and gravel) and Holocene sediments (silty
clay).
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The Nile River along with the two main irrigation canals namely El-Kalabia and El-Gamalia
and several other small irrigation canals and drains represent the surface water system in the Qus
area (Fig. 1) .The Nile borders Qus City on the western side, and water is used directly and
indirectly (via irrigation canals) for irrigation. The width of the valley in the study area is about
20 km, and the Nile River is 750 m at its widest point. At the High Dam area, the maximum
water level of the Nile is 169 m (amsl) in August, and the minimum water level is 163 m (amsl)
in July. In the study area, the maximum water level of the Nile is 72 m (amsl) in July, and the
Administration, 2010). These water level values are lower than the groundwater table in the
There are two main canals crossing Qus City (Fig. 1): the El-Kalabia and the El-Gamalia.
The El-Kalabia canal extends for about 270 km from the Esna barrages to the north of Nag
Hammadi, and passes northward on the eastern side of the city. The maximum water level in the
El-Kalabia canal in the upstream southern portion at Esna is 71.8 m (amsl) in July, while the
minimum water level is 66 m (amsl) in January. The El-Gamalia canal lies on the western side of
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the city and is about 9 km in length. It starts from El-Sabah-Euon (southwestern part of the city)
and passes through several villages in the city; and terminates at EL-Shaikhia in Qift City. Also,
there are two small canals namely Qus and El-Maara that cross on the southwestern parts of the
city (Fig. 1). The EL-Maara canal begins at the entrance of Qus City in Higgaza and ends in
Abbasa village. The Qus canal is about 6 km in length, and starts in El-Kharanka village and
ends in Abbasa village. Large quantities of wastewater and solid wastes are discharged directly
The Qus drain is the main drain serving the irrigated land in the study area (Fig. 1). The drain
water is reused for irrigation either directly or indirectly via discharges into the Nile and/or the
main canals. The reuse of drainage water for irrigation reduces the amount of fresh water
Runoff represents the rainfall water that passes through the drainage basins when the rainfall
intensity exceeds the infiltration capacity and leads to destructive flash floods. A significant
runoff event occurred in November 1994, and the water caused extensive damage to the houses
and other infrastructure (e.g., roads, houses and water reticulation pipes) in Higgaza village.
Groundwater occurs under unconfined conditions in two shallow and hydraulically connected
layers, which consist of a highly permeable and porous Pleistocene layer (gravels and various
graded sand) on the bottom and a semi-permeable Holocene layer (clay–silt and/or fill deposits)
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on the top. The aquifer is underlain by Pliocene clays, which form an impervious base. The
thickness of this aquifer, as well as its width, differs from one locality to another; for example, its
thickness decreases from 300 m at Sohag to a few tens of meters in the southwestern part of
Luxor (Sayed, 2004). The Holocene layer has low horizontal and vertical permeability, and it is a
local and moderately to the low productive aquifer. The aquifer is very thick near the river
channel and vanishing near the fringes of the valley; the thickness varies from 5 to 26 m (Abu El
Elaa, 1990; Abdalla et al., 2009). Its horizontal and vertical permeability range from 0.40 to 1.00
m/d, and the vertical hydraulic conductivity is low and increases with depth (Abd El-Moneim,
1988). The Pleistocene layer forms the main aquifer and has high horizontal and vertical
permeability. It is a high to moderate productive aquifer that situated along the course of the Nile
River. Its hydraulic conductivity varies from 60 to 100 m/d, and the transmissivity ranges from
2 -4
2000 to 6000 m /d (Attia, 1985). The values of aquifer storativity amount to 5 to 50 × 10 for
the semi-confined aquifer and 0.1 to 0.2 for the unconfined one. The upper semi-permeable clay–
silt and/or fill deposit layer drains to the lower layer. According to earlier work (Barber and Carr,
1981; Farrag, 1982; Abd El-Moneim, 1988; Ahmed, 2003), infiltration test results showed that
there was an infiltration rate of 2.5 m/d on average, which is indicative of good hydraulic
connectivity between these two layers. The groundwater generally flows toward the north, and
other local flow directions can be found either from or toward the Nile River, which acts as a
major natural drain. Potential contamination from surface activities, especially discharged
Severely polluted surface waters artificially recharge the Quaternary aquifer in the study area.
The recharge components consist of (1) seepage from irrigation canals along with infiltration of
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sugarcane fields; (2) domestic and industrial wastewater infiltration; (3) seepage from the
broken-down drinking water supply network; and (4) upward leakage from the deep aquifers
through fractures in the rocks. The recharge from irrigation was determined to be 0.8–1.1 mm/d
over the clay (semi-confined) and 1.9–2.1 mm/d over the unconfined areas (Warner et al., 1991).
Direct groundwater pumping from wells, especially for irrigations purposes, takes place in the
new reclamation area, and water is ultimately discharged to the Nile; additionally, upward
capillary flow occurs from the shallow water table owing to evapotranspiration. These are the
A total of 12 surface water samples were collected from irrigation canals and drains crossing
the city as well as the Paper Factory Lake (samples 34 and 35 were from the El-Maara canal,
samples 36 and 37 were from the Qus drain, samples 38, 39, 40, 41, and 42 were from the Qus
canal, sample 43 was from the Paper Factory Lake, and samples 44 and 45 were from the El-
Gamalia canal); additionally, 33 groundwater samples were collected (24 samples were from
very shallow wells 1–3.5 m in depth (Table 2, bold lines), and 9 samples were from shallow
wells 8–12 m in depth). Both the residential area and the surrounding cultivated land were
sampled to obtain data for the physicochemical analyses. The bacteriological analysis was
carried out for 23 selected water samples (17 groundwater and 6 surface water samples). Sample
bottles were cleaned, dried, and washed again before taking the sample with the sample water.
All water samples were sealed carefully and labelled after collection. The samples were put into
an ice box and then delivered to a refrigerator where they were stored at 4°C until being sent out
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to laboratories for the analysis. Samples for heavy metals measurements were acidified by nitric
acid and kept in the refrigerator until analysis, and samples for nitrate measurements were
acidified by sulfuric acid and delivered to a laboratory for analysis. Salinity, total dissolved
solids (TDS), temperature (T), pH, redox potential (ORP), alkalinity, and electric conductivity
(EC) were directly measured in the field. Major ions, trace inorganics, silica, and bacteriological
analyses (E. coli and total coliform bacteria) for surface and groundwater samples were
undertaken at the Laboratory of the Egyptian Environmental Affairs Agency at Aswan. Methods
for the collection and analysis of water samples essentially followed those given by the American
Public Health Association (APHA) (APHA, 2012), and to evaluate the validity of the analytical
data, field blanks and field duplicates were incorporated. The chemical analyses for the major
2+ 2+ + +
cations (Ca , Mg , Na , K ) were performed by using a Spectra-AA-55 Atomic Absorption
-
Spectrophotometer. The titration method was used for determinations of the anions HCO 3 and
- 2- -
Cl . A DR/2400 Spectrophotometer was used for the determination of SO 4 , NO3 , trace
elements (Pb, Cd, Zn, Fe, Mn, Cr), and silica (SiO2).
Surface and groundwater samples for microbiological analysis were collected separately
from 23 locations (17 groundwater and 8 surface water samples) (Table 3) in sterile 500-mL
polyethylene containers. Collected samples were brought to the laboratory on ice, and the
analysis was conducted within 24 h. Sterilized syringes were carefully used for water sampling
to avoid contamination. The water was first pumped for 5 min, and then, sample containers were
filled with the sterilized syringes. The containers were immediately capped with stoppers, and
aseptic techniques were used during sampling. The samples were kept cool and delivered
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immediately to the laboratory. The total coliform test is a primary indicator of potable water
suitable for drinking purposes. It estimates the numbers of faecal coliforms (E. coli) and other
types of bacteria in 100 mL of water and is expressed in colony forming units (CFU)/100 mL of
water.
To investigate water contamination in the study area, all sources of domestic wastewater (raw
sewage), agriculture pollutants, and industrial pollutants were studied (Fig. 3). Many different
contamination sources were observed within the study area, and most consisted of municipal
wastewater (sewage discharges; Fig. 3A). There was evidence of both point and non-point
pollution sources in the study area. The point sources were fairly easy to recognize because the
wastewater was discharged above ground and then was allowed to seep into nearby surface
waters.
Figure 3. Field photographs showing various types of wastewater effluents: (A) sewage
discharge (green colour refers to algae cover), (B) surface water (Qus canal) contamination, (C)
Paper Factory Lake, (D) sugarcane factory wastewater discharge into the Nile.
As a high-density residential area with no sewer access, people in the study area construct pit
latrines (single-chamber) built of red brickwork in their homes; thus, the main contamination
source was on-site sewage discharge processes. These latrines are constructed in such a way that
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wastewater is allowed to percolate from the bottoms and walls, and higher permeability soils
suggests that more percolation will take place, thus resulting in high rates of loading of toxic
constituents and bacteria to groundwater. The amount of wastewater discharged depends on the
total amount of domestic water consumption and the population density of the city.
In the study area, the total domestic water consumption amounted to 25,000 m³/d. Qus’s
drinking water network receives most of its water from the Nile River, which is the main source
for the water supply, and there are also two municipal well facilities (the El-Maara and El-
Maseed deep wells). Other deep wells are installed in many places in the study area in the areas
that are not serviced by the water network. Qus’s drinking water network has old pipes that are
˃20 years old. It was poorly designed, and daily interruptions and losses of water occur; breaks
in the pipes increase the probability of water contamination. The majority of this water is
artificially recharged into the ground as sewage-laden with pollutants, and such discharges cause
As a result of rising groundwater levels, the pit latrines can become filled with sewage water,
and at times, raw sewage has poured out into the streets (Fig. 3A). Wastewater is also transported
by vehicles in large quantities to nearby irrigation canals (e.g., the El-Gamalia, El-Maara, and
Qus canals) and drains. Sometimes it is moved to the neighbouring cultivated areas without any
control from the City Council (about 150,000 people live around these canals, and the majority
of them discharge their raw sewage directly into them). The most affected parts are confined to
the city centre, especially in Ewadate, Shaareen, and El-Fashawna areas (Fig. 3A), and some
scattered points of impact can also be found in the western parts around the Paper Factory Lake.
This was confirmed from the results of the chemical and bacteriological analyses, where the
main pollutants detected in sewage wastewater contained organic material (microbial pathogens),
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nitrogen-based compounds, and trace elements, all of which may negatively impact human
health.
The city is surrounding by agriculture, and intense yearlong agricultural practices take place,
especially in the sugarcane fields that are located in close vicinity to the houses. Excessive use of
artificial fertilizers along with flash irrigation techniques (two to three times a month) result in
agrochemicals, fertilizers, and manure in agricultural areas is the main source of nitrate
contamination. Commonly used fertilizers include urea, calcium nitrate, ammonium nitrate,
ammonium sulfate, and superphosphate. The major types of pollutants that can be expected in
agricultural drains are salts, nutrients (nitrogen and phosphorus), pesticide residues, pathogens,
toxic inorganic compounds, and organic compounds; their adverse impacts on groundwater may
accumulate over time. The presence of nitrate above the permissible level set by the WHO and
the Egyptian Higher Committee for Water (EHCW) may be due to the high use of fertilisers in
neighboring agricultural fields and/or from seepage from the on-site sewage discharge processes.
There is not much industrial activity in the study area, and the main sources of industrial
pollution are the Paper Factory and Sugar Factory (Figs. 3C and D), located in the northwest part
of the study area. These factories discharge their effluents following little to no treatment into the
Nile or to lakes. The main pollutants from the Sugar Factory include organic matter high in
carbohydrates; those from the Paper Factory include bagasse, oils, and grease. The discharged
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wastewater from the Paper Factory has a high chemical oxygen demand (COD) and biochemical
The Paper Factory discharges liquid industrial wastes into a poorly protected lake (sample
No. 43; Fig. 3C), which is situated close to the Nile. The chemical reactions among these
pollutants generate a variety of toxic substances. The factory discharges approximately 20,000
3
m /d of wastewater into the lake and the Nile. Various raw materials including bagasse are used
for paper production, and these materials are treated physically and chemically to eliminate
lignins and produce white paper. Industrial wastewater containing various pollutants may
Measurements of the water table depth within 33 groundwater wells have been carried out,
and water levels were calculated. The water table varies from 63 to 75 m (amsl) in much of the
study area (Table 2). The depth to water was ~1 m below the ground in the low-lying
southeastern parts, and it increased in the western parts of the Nile River to ~12 m. The
differences between the very shallow and shallow water table levels reflect the variation in the
ground surfaces and the location of the sand bed below a sequence of alternating clay–silt and/or
fill deposits. Based on the analysis of the water table, a gradual decrease in the northward and
westward directions was noticed. Thus, the general groundwater flow direction was from the
southeast to the northwest towards the Nile, with anomalies in some regions, especially in the
city centre. As the groundwater level ranged from very shallow to shallow below the ground
surface in some areas, waterlogging was observed when the amount of discharged wastewater
exceeded the infiltration capacity of the top layer (clay–silt and/or fill deposits).
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The most important physicochemical parameters including pH, EC, total hardness (TH),
- 2- -
TDS, Cl , SO4 , NO3 , Pb, Cd, Zn, Fe, Mn, Cr, and SiO 2 were determined in surface and
distribution maps of these parameters were prepared by using ArcGIS software with the kriging
interpolation method.
As shown in Table 2, the groundwater temperature ranged from 15.6 to 26.9°C with an
average of 23.1°C, while the surface water temperature ranged between 15.6 and 23°C with an
average of 18.2°C. The pH values of groundwater samples ranged from 7.1 to 8.2 with an
average of 7.6, and thus, the data were reflective of neutral to slightly alkaline conditions. The
surface water pH values varied between 7.8 and 9.2 with an average of 8.3, which is indicative of
mildly alkaline water. These pH values might have been due to the high content of base
The redox value in groundwater ranged from 29 to 311 mV with an average of 113 mV. The
high ORP values observed in very shallow wells are reflective of oxic conditions, and the lowest
value was observed close to the city centre. In surface water, redox values varied between 43 to
302 mV with an average of 134.5 mV. The lowest value was observed in sample No. 39, which
was collected close to the downstream part of the Qus canal. This value reflects reducing
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conditions due to discharges of raw sewage into the canal and the accumulation of algae. Under
reducing conditions, nitrate undergoes denitrification, and this coincides with high iron and
manganese contents (Table 2). The highest ORP value was observed in sample No. 41, which
was collected close to the upstream part of the Qus canal and away from the city centre; this
value reflects oxic conditions, and such conditions are present because of the continuous
In groundwater, EC and TDS values exceeded those of surface water because of water-rock
interactions as well as the anthropogenic inputs. The EC of groundwater varied between 385 and
4620 µS/cm with an average of 1719 µS/cm. Some wells with high salinity values were located
close to the city centre (Fig. 4). These were largely impacted by anthropogenic sources, primarily
by domestic and industrial wastewater effluents. For surface water, the EC values ranged from
272 to 2311 µS/cm with an average of 751 µS/cm; these values were lower than the mean values
in groundwater. The Paper Factory Lake (sample No. 43; Fig. 4) had a high EC value of 2311
µS/cm because of the discharge of many industrial and chemical wastes into the lake. High ions
contents in the water cause the water to be corrosive, and scale formation can occur.
Total hardness of the collected samples was calculated based on Todd (1980), and the data were
compared with ASTM (1976) classification levels. The predominant class (29 samples, 88%) of total
hardness in groundwater samples was the very hard class (>200 mg/L), and the rest (4 samples,
12%) ranked at the moderately hard level (101–200 mg/L) (Fig. 4). The high values
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- 2
of total hardness may have been due to the dissolution of HCO3 , SO4 , and the alkaline
features of the soils. Out of the 12 surface water samples, 6 samples (50%) were classified into
the very hard class, 5 samples (42%) were classified into the moderately hard class, and only 1
sample was classified into the slightly hard class (56–100 mg/L).
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4.3.5. Chloride and sulfate (Cl and SO4 )
Except for in saline and brackish water, the contents of chloride in natural water (which are
typically around 100 mg/L; Fetter, 1999) can be used as an indicator of anthropogenic
-
contamination. The Cl concentrations in groundwater varied from 21.0 to 192.7 mg/L with an
2-
average of 63 mg/L, and that of SO4 ranged from 6.3 to 557.5 mg/L with an average of 169
-
mg/L; thus, a wide range of variation was detected. In surface water, the Cl content ranged from
2-
19.6 to 72.9 mg/L with an average of 41.7 mg/L, while the SO4 content ranged from 13.2 to
- 2-
479.5 mg/L with an average of 100.4 mg/L. The highest Cl and SO4 contents in surface water
were recorded in sample No. 43, Paper Factory Lake (Fig. 4).
-
The measured Cl contents were under the recommended limits of WHO (2008) and EHCW
2-
(2007) (250 mg/L), and only three groundwater samples and one surface water sample had SO 4
contents above the permissible limit of 400 mg/L.
- 2-
Higher values of Cl and SO4 were recorded in the places where the dumping of sewage is
common and where animal wastes and fertilisers containing KCl and potassium sulfates are
2-
present; the significant positive correlation between Cl and SO 4 confirmed this proposition
(Fig. 4). Additional chloride sources may have been due to the dissolution of halite from water-
bearing formations. The increased concentrations of alkalis and chloride are indicative of the
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influence of mixing between natural water and wastewater leaking from the sewage ponds,
from conventional sources like human and animal wastes as well as fertilisers. Moreover, the
2- -
SO4 /Cl ratio in 55% of the water samples exceed unity, which might be an indicator of
contamination by sewage water; these samples were mostly concentrated close to the city centre.
-
4.3.6. Nitrate (NO3 )
Since nitrogenous materials are rare in the geological record, nitrate in groundwater is
usually due to anthropogenic activity; clean natural water typically contains ˂10 mg/L nitrate. In
the study area, the sources of nitrate included both diffuse and point sources. The nitrate
distribution map (Fig. 4) shows that nitrate concentrations in groundwater varied between 5.17
(well No. 7) and 96.11 mg/L (well No. 23) with an average of 38.7 mg/L. The lowest values were
detected in the northwestern and southwestern parts of the city, which might reflect that the
inputs were mainly in the form of ammonium and not nitrate; these data coincided with low ORP
values of 48 mV and higher Fe and Mn contents (Figs. 4 and 5). The highest values were
detected in the middle and northwestern parts of the city. These areas are enclosed by closely
spaced standing houses in the oldest and densely populated part of the city and agricultural lands
(Fig. 4). The nitrate content of the surface water ranged from 26.1 (sample No. 44, El-Gamalia
canal) to 97.4 mg/L (sample No. 39, Qus canal) with an average of 53.4 mg/L. The raw sewage
discharged from the oldest and highly populated part (Fig. 4) was likely behind the high value
recorded in the Qus canal. Of the 33 wells, 10 samples (30%), and of the 12 surface water
samples, 6 samples (50%), exceeded the limit of 50 mg/L set for drinking water by the WHO and
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EHCW, but the samples were still under the allowable limit of 135 mg/L for irrigation water. The
high nitrate values could be partly the result of organic sources (sewage wastewater and manure
applications) and inorganic sources (improper use of nitrogenous fertilizers in the agricultural
2- - -
Figure 4. GIS spatial distributions of SO4 , Cl , NO3 , EC, ORP, and TH in the study area.
Trace elements including Pb, Cd, Zn, Fe, Mn, and Cr were detected in surface and
groundwater samples in the study area. The concentrations in some samples were at
concentrations more than the allowable limit for drinking water and irrigation purposes
according to the WHO (2008) and USEPA (1994) based on their toxicity and bio-accumulative
nature (Fig. 5; Table 2). Lead contents in groundwater varied between 0.001 and 0.025 mg/L
with an average of 0.01 mg/L. Lead values exceeded the maximum contaminant level for
drinking water set by WHO (0.01 mg/L) in 40% of the samples, but the values were less than the
standard for irrigation water (5 mg/L). For surface water, Pb contents were higher compared to
that of the groundwater, and they varied between 0.003 and 0.18 mg/L with an average value of
0.011 mg/L. The highest value was observed in sample No. 43 from the Paper Factory Lake (Fig.
5; Table 2). Elevated Pb concentrations may reflect the seepage of wastewater and the leaching
of fertilisers into the aquifer. Lead is toxic in small concentrations, and Pb can be especially
harmful when it exceeds the recommended limit of 0.015 mg/L (WHO) in drinking water. Lead
can cause anaemia, lethargy, and abdominal pain along with delays in physical or mental
development for infants and children, and kidney problems and high blood pressure for adults
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(USEPA, 1994; WHO, 2008). Cadmium contents in groundwater varied from 0.001 to 0.015
mg/L with an average 0.005 mg/L, while those in surface water varied from 0.001 to 0.012 mg/L
with an average of 0.006 mg/L. Rocks mined for phosphate fertilisers contain varying amounts
of Cd. Cadmium is very toxic, and elevated concentrations may cause liver and kidney damage
(0.003 mg/L; WHO, 2008). Zinc values in groundwater ranged from 0.002 to 1.25 mg/L with an
average of 0.26 mg/L, and those in surface water ranged from 0.002 to 1.11 mg/L with an
average of 0.422 mg/L. Zinc contents in most wells, as well as in the surface water samples, was
high compared to the recommended values for drinking water and for irrigation purposes (2
mg/L). The highest Zn content was observed in sample No. 43, Paper Factory Lake, and this was
due to the accumulation of the solid and industrial wastewater discharged (Fig. 5; Table 2). Zinc
in drinking water does not readily cause ill effects, but it can impart a metallic taste to the water
Iron contents in groundwater varied from 0.012 to 0.284 mg/L with an average of 0.125
mg/L, while the values in surface water varied from 0.011 to 0.121 mg/L with an average of
0.044 mg/L. High Fe contents in water can stain laundry and contribute to clogged pipes and
well openings (0.3 mg/L; USEPA, 1994). Manganese was less abundant in the groundwater than
iron, and the Mn contents of the groundwater ranged from 0.001 to 0.283 mg/L with an average
of 0.106 mg/L, while the values for surface water ranged from 0.001 to 0.091 mg/L with an
average of 0.02 mg/L. Similarly, the high Mn contents might have been due to the sewage
disposal practices, the use of pesticides on older croplands, and industrial wastewater discharges
from the Paper Factory. As shown on Figure 5 the highest Fe and Mn contents were observed in
the northwestern and eastern parts of the city. High Mn contents in water can cause a bitter
metallic taste, and the water may be black to brown; Mn also leaves grey stains on porcelain and
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fabrics and contributes to clogged pipes and wells (0.5 mg/L; WHO, 2008). The presence of
dissolved Fe and Mn in groundwater is mainly controlled by the availability of low ORP values
(˂200 mV). Degradation of infiltrated organic wastes in surface and groundwater results in the
depletion of the dissolved oxygen. The Fe-rich and Mn-rich reduced zones in this study
coincided quite well with the relatively low nitrate and redox values, which was likely due to
denitrification reactions (Table 2). Chromium sources in groundwater were likely from the
sewage sludge and the use of organic fertilisers (manure) in agriculture areas (Deutsch, 1997).
Chromium concentrations in groundwater samples varied between 0.001 and 0.082 mg/L with an
average of 0.03 mg/L (Fig. 5; Table 2). In surface water, the Cr values ranged between 0.026 and
0.114 mg/L. High Cr contents above the WHO guideline (0.05 mg/L) were detected in well No.
14 and in surface water sample No. 43, Paper Factory Lake, which might have been due to the
accumulation of the industrial wastewater discharged. One potential impact of high Cr levels is
acute toxicity to plants and animals. Drinking water with high levels of Cr (0.05 mg/L) over long
periods of time can lead to cancer, while lower doses may irritate the gastrointestinal mucus
(Kaufman and Dinicola, 1970; WHO, 2008). According to the spatial distribution map (Fig. 5)
for the detected heavy metals, except for Fe and Mn, the highest values were observed in the
Figure 5. GIS spatial distributions of heavy metals Fe, Mn, Pb, Zn, Cd, and Cr in the study area.
The presence of trace elements with remarkable concentrations in surface and groundwater
might be related to the disposal of wastewater, especially from industrial and sewage sources into
23
Silicon in natural water is usually present as silicon dioxide, SiO 2, or its hydrated form, Si
(OH) 4. As much as 60% of the Earth’s crust is composed of silicate minerals; therefore, silica
constitutes the bulk of rocks, soils, clays, and sands (Khan et al., 2015). For groundwater, the
average silica content is typically 17 mg/L, and for stream water, the content is typically about
14 mg/L. Dissolved silica in natural water is related to the weathering of silicate minerals.
In groundwater samples, SiO2 contents ranged between 2.4 and 25 mg/L with an average of
14.9 mg/L. Surface water samples exhibited low silica contents in comparison to groundwater
samples, and these samples ranged between 0.8 and 9.4 mg/L (the high concentration was for
sample No. 43, Paper Factory Lake) with an average of 2.3 mg/L. The long-term water-rock
interactions in the groundwater aquifer were behind the higher silica contents in groundwater
compared to surface water, but the dilution effect by water flowing in canals and in drains likely
-
type, with HCO3 concentrations varying from 7 to 11 meq/L and Ca concentrations varying
-
from 9 to 16 meq/L. On the other hand, wastewater is carbonate-poor water with HCO 3 and Ca
contents ranging between 4–4.2 meq/L and 2.6–3 meq/L, respectively. These two water types are
assumed to represent end-members of a mixed system (Domínguez-Mariani et al., 2004). Figure
-
6a shows that values of HCO 3 and Ca in the wastewater samples were adversely affected by
wastewater infiltration, as indicated by the by the random distribution of the water points that
reflect different chemical compositions. The plot (Fig. 6a) suggests that the sampling points were
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located between surface wastewater and natural, unaffected groundwater values, thus defining a
mixing trend.
- -
Figure 6. Scatter plots of (a) HCO3 versus Ca and (b) SiO2 versus Cl in the study area.
The severely contaminated zone (Fig. 6a) included seven surface water points from the El-
Maara and Qus canals and two samples from the El-Gamalia canal, and the results strongly
support the conclusion that direct raw sewage disposal influenced the water quality in these
canals. Two very shallow groundwater wells (No. 5 and 7) were located in this zone, and here,
wastewater predominantly influenced the groundwater. This shows that the interaction between
wastewater and surface and groundwater plays a major role in the contamination process, mainly
through wastewater infiltration. Thus, the major contributors of major ions, nitrates, heavy
metals, and bacteria to surface and groundwater were from raw sewage disposal practices,
-
Relationship of SiO2 with and Cl : Chloride acts as a reactive tracer and moves freely in
groundwater as large-sized ions; specifically, it does not readily adsorb onto mineral surfaces nor
enter rock-forming minerals, and it does not participate in ion exchange processes (Khan et al.,
valuable indicators of anthropogenic impacts. Meanwhile, SiO2 enters the groundwater mainly
-
from water-rock interactions (Hem, 1985). Accordingly, SiO2 versus Cl plots (see Fig. 6b) can
be used to assess the contributions of anthropogenic and geogenic processes to the groundwater
chemistry.
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-
In the plot of SiO2 versus Cl (Fig. 6b), three distinguished groups were identified. Group (I)
consisted of four very shallow groundwater wells where the water depth was ˂3.5 m, and this
-
group had low SiO2 contents (˂4 mg/L) and high Cl contents (up to 200 mg/L) reflective of
-
anthropogenic contamination. Group (II) contained the majority of the samples with Cl contents
that progressively increased from 25 to 165 mg/L and almost constant SiO2 values (15 to 17
-
mg/L). This indicates that the bulk of the Cl content was acquired by processes (anthropogenic)
other than those responsible for the acquisition of SiO 2 (geogenic). Group (III) contained four
samples clusters, and the results exhibit comparatively high SiO 2 contents (20–25 mg/L) together
- -
with low Cl contents (˂50 mg/L), which suggests that the bulk of Cl was acquired through
geogenic processes (rock-water interactions) and not anthropogenic processes in these locations.
-
SiO2–Cl and HCO3–Ca data provided clear evidence that the role of water-rock interaction
process was relatively less significant than anthropogenic processes in terms of the water
chemistry in the study area.
For the bacteriological analyses, total coliforms, faecal coliforms, Salmonella, Pseudomonas,
and Klebsiella were examined at selected water points (Table 3). The presence of faecal coliform
bacteria indicates that a faecal source was present, likely from the mixing of domestic
wastewater, cesspools leaking, and/or sewage discharges into surface and groundwater. Such data
indicate that pathogenic organisms may be present, which could be capable of causing diseases
that represent severe and even deadly health concerns. Bacteriological examination in the forms
of E. coli and total coliforms indicated that there was great variation in the spatial distribution of
the coliform counts. The optimal pH values for bacterial growth are 6–8 (for
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neutrophilic bacteria), whereas extremely acidic or basic environments tend to prevent bacterial
growth. In the study area, pH values of groundwater were 7.1–8.2 with an average of 7.6, and
such pH values represent suitable environments for bacterial growth. Out of 17 shallow wells, 10
wells (59%) along with all the surface water points (100%) had significant counts of faecal
coliforms, which are facultative aerobic organisms (Fig. 7; Table 3). The results showed that all
surface and groundwater samples had total coliform levels that exceeded the recommended limit
groundwater and 8 surface water samples, SW (sewage water from El-Salhiya sewage treatment
plant at Qena).
Figure 7. GIS spatial distributions of faecal coliform and total coliform in the study area.
In groundwater, the highest count of bacterial contamination was observed in well No. 12
(112 fecal and 270 total coliforms), which is where sewage and wastewater discharges with high
organic matter content accumulate. The minimum count (0 faecal and 8 total coliforms) was
observed in well No. 2. In surface water, the highest bacterial count (224 fecal and 965 total
coliform) was observed in sample No. 38, which was collected close to the downstream part of
the Qus canal and in the southern portion of the city center (Fig. 7). This may have been due to
heavy discharges of raw sewage and algae accumulation. The lowest bacterial count (39 faecal
and 78 total coliforms) was observed in sample No. 41, which was collected in the upstream part
of the Qus canal; this may have been due to the continuous recharge from the Nile. Similar
trends were observed for the ORP values (Tables 2 and 3). Accordingly, proper sanitary
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protections should be provided when production wells are constructed to reduce or minimize the
impacts of bacteriological contamination. The presence of coliform bacteria indicates that the
water may be contaminated with organisms that can cause disease. The faecal and total coliform
counts in the sewage water of the El-Salhiya sewage treatment plant at Qena, north of Qus City,
were 106,000 and 1,800,000 CFU/100 mL, respectively. According to the WHO guideline for
drinking water, the total and faecal coliform count should be 0 CFU/100 mL, while no more than
200 faecal coliforms/100 mL of water should be present in areas where recreational activities
take place. Water boiling and/or chlorination are common disinfection techniques for water
contaminated with coliform bacteria. From the above results, only the water from the deep wells
and the established network is recommended for drinking in the study area.
Surface water resources in the study area are highly impacted, as shown from the above
discussions, and therefore, a contamination risk map was constructed for the groundwater
samples to help protect potable water supplies. The risk map was based on six major water
-
pollution indicators (NO3 , Pb, Cr, Cd, faecal coliform, and total coliform), and these data were
integrated into the GIS along with land-use and possible contaminant source information. For
each pollution indicator, a GIS thematic layer was created (Fig. 8) to extrapolate the areas with
different risk classes (Fig. 9). Four different classes on the risk map were assumed based on the
maximum allowable levels (MAL) set by the WHO and EHCW and the obtained values from the
chemical and bacteriological analyses. For example, the nitrate content was classified into four
risk classes as follows: class 1: ˃45 mg/L, high; class 2: 20–45 mg/L, moderate; class 3: 10–20
mg/L, low; and class 4: ˂10 mg/L, very low. In the case of faecal and total coliform, bacterial
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counts were divided into the following categories: ˃50 CFU/100 mL, high; 10–50 CFU/100 mL,
moderate; 0–10 CFU/100 mL, low; and 0.0 CFU/100 mL, very low.
-
Figure 8. GIS thematic maps for NO3 , Pb, Cr, Cd, faecal coliform, and total coliform.
Areas of high contamination risk (39,3% of the area; these sites were located in the western,
northeastern, and central parts) were detected in locations where intensive wastewater is
discharged from various sources; thus, strict measures to prevent or minimize the groundwater
contamination are urgently needed in these areas. Areas of moderate risk were also common
(36.3%) along the northwestern, southern, and eastern parts of the study area. Low and very low
risk zones amounted to only 13.3% and 11.1%, respectively, of the study area, and these few
sites were mainly located in the southeastern part of the study area.
Based on the analysis of the risk map, a major portion of the study area is in high and
moderate risk contamination zones, and only a smaller portion in the southeast can be classified
as low and very low-risk zones. Accordingly, the aquifer is under stress from contamination, and
the shallow water table and the absence of a formal sanitation network are exacerbating the
problems in this region. The validity and accuracy of the resulting risk map was verified against
available hydrogeological data, field observations, and the locations of existing sewage and
wastewater infrastructure. This risk map should be a useful tool for prioritizing mitigation
29
surface water were evaluated by screening 45 water samples. The detected threats in the study
area arose mainly from anthropogenic activities, especially the leakage of sewage, irrigation-
- 2-
return flows, and/or industrial wastewater discharges. The contents of nutrients, Cl , SO4 , heavy
metals, and bacterial loads in many samples were above the WHO and EHCW standards.
-
Results showed that 52% of the examined groundwater samples had concentrations of NO 3 ,
- 2-
trace metals, Cl , and SO4 that were higher than the recommended maximum permissible
levels. Effluents from domestic and industrial wastewaters and irrigation-return flow laden with
chemical fertilisers from nearby agricultural areas might be behind these high contents. As
-
indicated by the HCO3 versus Ca plot, the majority of groundwater samples (94%) fell in the
wastewater and groundwater mixing zone. Meanwhile, the remaining groundwater samples (6%)
along with 58% of the surface water samples fell in the severely contaminated zone. The SiO 2
-
versus Cl plot revealed anthropogenic impacts in the form of mixing between wastewater and
groundwater. Results showed that faecal coliforms are problematic in 59% of the groundwater
samples and 100% of the surface water samples, and all samples contained total coliforms. The
high bacterial loads confirm that the contamination is from the anthropogenic activities in the
-
form of sewage effluents. Six major water pollution indicators (NO 3 , Pb, Cr, Cd, faecal
coliform, and total coliform) were used to create six thematic maps, which were processed into a
risk map. According to the risk map, four main contamination zones (high, moderate, low, and
very low) within the aquifer were identified. The majority of the study area (75.6%) was
classified as “moderate” to “high” risk, and these locations occupied the western, northeastern,
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and central parts of the study area, which suffer from heavy sewage and industrial effluents. Low
and very low-risk zones for aquifer contamination occupied only 24.4% of the study area along
The risk map was verified with hydrogeological, field, and laboratory data. As indicated
above, the most impacted parts were at or near the city centre in areas that suffer from heavy
sewage and industrial effluents. Results confirmed that, because of improper wastewater disposal
practices, surface and groundwater resources are at a relatively high risk for contamination.
Thus, future mitigation efforts will be needed to protect the water resources in this region.
anonymous reviewers for helpful advice and suggestions. The authors would like to extend their
sincere appreciation to the Deanship of Scientific Research, King Saud University for its funding
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