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Abstract
The `epidemiologic revolution' of the 1960s arose in response to the inability of reductionist
methods to provide practical solutions to the complex problems of health and production in
livestock systems. In a farm, there are not only interactions between animal factors and herd
husbandry factors such as feeding, housing, and microbiological environment, but also with a
number of other `non-animal' factors. For this reason, a `global' or `holistic' approach, aimed at
explaining animal health status within the overall dynamic of a livestock production system, was
developed in France under the title of `ecopathology'. In ecopathology, the discipline of
epidemiology is integrated into a systemic approach, including: the development of a preliminary
conceptual model, sampling based on the structure of the livestock production system, the
establishment of a field study by a multidisciplinary team, the organization and management of the
animal health and production information, data analysis, the distribution of results to all participants
and the development of a preventive medicine programme.
The farm is also influenced by the social, economic and environmental setting to which it
belongs. To account for this, a change of scale is necessary. The three elements of the livestock
production system considered in ecopathology (farmer, herd and resources), at the level of the
agroecosystem become a human community (farmers, consumers, decision-makers), an animal
population, and the complex of human, social and economic conditions within the system. The
concept of agroecosystem health is closely linked to the overall principle of improving the
sustainability of the system. This and other measures of the health status of an agroecosystem can
be assessed with methods developed by epidemiologists and other disciplines within a system's
perspective. In this systems view, ecopathology provides a basis for assessing herd health whereas
agroecosystem health develops the broader context into which ecopathology contributes. # 1999
Elsevier Science B.V. All rights reserved.
0167-5877/99/$ ± see front matter # 1999 Elsevier Science B.V. All rights reserved.
PII: S 0 1 6 7 - 5 8 7 7 ( 9 8 ) 0 0 1 4 9 - 4
112 B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128
2. System theory
These changes mirrored a similar revolution among agronomists who were developing
the concepts of farming systems theory (Von Bertalanffy, 1970). Faced with numerous
failures of agricultural development projects in both industrialized and developing
countries, many agronomists questioned the efficacy of their traditional reductionist
research methods (SeÂbillotte, 1978) and searched for more holistic paradigms. Central to
farming systems theory was the socio-economic principal that ``farmers' practices
respond to certain aims and constraints, and the ignorance of those is the principal
source of the failure of technical solutions developed from research'' (Tourte, 1965). This
expansion of the traditional technical domains of animal health and production practice to
include consideration of the economic, social, and technical objectives of farmers has
been applied in practice by many veterinary epidemiologists (e.g. Bigras-Poulin et al.,
1985), who have wisely noted that without this integration, the objectives of the
epidemiological revolution would remain unfulfilled.
Formally, farming systems research considers the interactions between three elements:
the farmer, the herd and available resources. The farmer makes decisions in accord with
both technical and/or behavioral criteria. These decisions are made operational through
farming practices which by direct or indirect pathways and feed-back loops influence
both the performance of the herd and the quantity and quality of animal products.
Farmers also influence and are influenced by the resources available in their particular
farming system which of course greatly influence herd productivity. The performance of
the farming systems have been assessed by various measurable indicators which can be
used in whole-farm decision-making.
Landais (1994) described a conceptual model of a livestock production system from his
perspective as an animal scientist (see Fig. 1), but its lack of explicit accounting for
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 113
Fig. 1. Working diagram for the farming system adapted from Landais (1994).
Just as farmers make decisions based on technical criteria within the farming systems
paradigm, ecopathologists seek to define herd health `referentials' as criteria for
supporting preventive medicine and herd management decisions to improve health
performance. Both animal-level (e.g. relative risk of diseases related to physiological
factors) or herd-level (e.g. the relative incidence of animal diseases in comparison to
other farms in the same area) referentials can be used depending on the type of decision
to be made. These decisions will also depend, as in the farming systems paradigm, on the
farmer's behavioral attitudes with respect to disease occurrence and risk and they will be
implemented through various practices (e.g. management, culling, feeding practices,
vaccination) which, separately or in combination, will influence the risk of `disease'. In
114 B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128
The sampling of farms by type of farming system. Since we consider the disease as an
output of the system controlled by inputs and farmer decisions, the farming system is
the operational basis for future actions.
The use of rigorous observational study methods by multidisciplinary teams
(veterinarians, epidemiologists, zootechnicians, farm technicians, professional organi-
zations, statisticians, computer scientists and others according to the needs of the
survey). This allows for the collection of a diversity of parameters, enlarging the frame
of epidemiologic information with concepts and methods from non-medical disciplines
(animal husbandry, economics, sociology). In terms of herd health delivery, this also
allows veterinary inputs to be better integrated into herd management (feeding,
reproduction, and production). Thus, the ecopathological approach is both multi-
disciplinary and multiprofessional.
The management and organization of an information system in a specific data base.
The collection of data in this context is characterised by a high degree of complexity
and linkages and with a great diversity of studied factors. This requires that careful
attention be paid to developing preliminary conceptual models based on prior
biological knowledge and subsequently revised by analysis of the assembled database.
This approach has been advocated for the analysis of complex biological systems with
a priori knowledge gaps (Mallows and Tukey, 1982). From this, empirical models are
developed using prior concepts refined in an iterative approach. Thus, unlike
experiments, data processing and analysis cannot be precisely defined at the beginning
of the study, since the analysis at any stage will be guided by the results of the previous
step. As a consequence, a fixed framework for data processing will be impossible to
construct and thus the data organization needs to be sufficiently flexible to support
unexpected applications (Lescourret et al., 1992).
A staged approach to data analysis. This will emphasize exploratory (especially
graphical methods), followed by methods to develop `structured' disease models
reflecting both previous theory and exploratory results and finally modelling to
estimate the relative importance of different risk factors and health indices within the
`structure' developed. However, these analyses may be complicated by a number of
problems including multicollinearity, confounding and interaction (Dohoo et al., 1996).
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 115
The general strategy for dealing with multicollinear data revolve around reducing and/
or re-categorizing the usually large number of independent variables prior to
investigating associations with the disease. This screening of associations between
independent and dependant variables can be done by various multivariable techniques,
such as correlation analysis, linear or logistic regression, correspondence analysis and
others.
The dissemination of results to all stakeholders and key players in the system. A
comprehensive programme to transfer the results of the survey includes: (i)
information transfer through brochures, technical documents, newspaper and magazine
articles, and workshop papers; (ii) skills transfer through training, development of
intervention guides and prevention manuals; (iii) raising awareness through discussion
groups, meetings and other publicity; and (iv) follow-up actions for assessing opinion,
refining materials and evaluating and measuring the impact of the proposed
modifications (Rosner, 1993).
The main objective of ecopathology is very practical, to identify the risk factors and
their interactions which most influence health performance in specific priority farming
systems. This approach has been used in tropical countries (Faye et al., 1994a) but the
main studies have been conducted in France (Barnouin, 1992; Faye, 1995; Faye and
Barnouin, 1996). The ecopathological study conducted in Brittany, France is a good
example of the latter. The study was conducted over four years (1986±1990) among
intensive dairy farms. This particular farming system was chosen since these farms were
supposed to represent the trend of French dairy farming towards increased farm size and
intensification (Faye and Barnouin, 1987). The study farms consisted almost exclusively
of Holstein±Friesian cattle with mean annual milk yields of at least 6500 kg, practiced
winter feeding based on silage, and had cubicles or free-stalls as the main animal housing.
Data were collected by a working group using a protocol developed by a multi-
disciplinary team. Data were collected at the cow (e.g. clinical diseases, production and
reproductive performance, cleanliness and body score, individual feed supplementation,
behaviour, and test results (e.g. milk bacteriology and blood metabolic profile)) and farm
(e.g. farming practices and conditions, baseline diet, eco-climatic parameters, inputs
assessment) levels.
A total of 4129 dairy cows (Holstein breed) contributing 8945 lactations and belonging
to 47 intensive dairy farms were involved. Farmers and veterinarians volunteered to
participate in the study. The participating farmers were purposively sampled as being
representative of the main dairy farming system in Brittany and all were members of the
Dairy Herd Improvement Association (DHIA). They were selected for their ability to
detect and record diseases efficiently, as judged by their veterinarians and confirmed
through a pre-study period. The State Veterinary Services from three French departments
(FinisteÁre, Ille-et-Vilaine and Morbihan) and the Veterinary Technical Association
participated in this survey. Pre-study training and discussions about data collection and
study design methods were used to help standardize the survey process among the
collaborators.
Veterinarians and farmers were given a glossary that included definitions of the main
clinical diseases of the dairy cow. Every six weeks, nine specialized surveyors from the
116 B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128
Fig. 2. Integration of the conceptual data models (thin framed boxes) with specific submodels (thick framed
boxes) into the global model of an epidemiological survey on dairy cows (adapted from Lescourret et al., 1993).
State Veterinary Services visited the farms to collect observational and management data,
to measure individual body condition and cleanliness scores for cows around calving, and
to collect milk samples for bacteriological analysis. Every month, individual milk
samples were collected from all lactating cows by DHIA technicians to estimate
parameters for milk yield and individual SCC. These data were accessible from DHIA
computer records (Fig. 2).
A database named Gwen-Ha-Du (`black-and-white') was developed. This database
included five basic data structures (Lescourret et al., 1993). The first comprised
identification and unique life histories for each cow, including identification, genealogy,
and culling. The second and third contained data collected throughout the cow's life,
including individual morbidity events and production and reproductive performance
measures (i.e. milk production, milk composition, bacteriological quality of milk, drying
off, calving and services). The last two data structures contained herd-level data on herd
management and feeding practices.
Results concerning all main elements of this dairy farming system were disseminated
and published. At the farmer level, a typology of farmer behaviour was developed using
the temperament of their animals as an indicator (Faye, 1996). At the animal level, the
factors affecting the distribution of clinical mastitis in space and time (Lancelot et al.,
1997), the importance of intramammary infections (Faye et al., 1994b), placental
retention (Chassagne et al., 1996), mortality (Faye and PeÂrochon, 1995), and the
association between diseases and culling (Beaudeau et al., 1994a, b) were studied. At the
herd environment and resources level, the dietary factors associated with somatic cell
count (SCC) (Barnouin et al., 1995) and the housing factors associated with udder health
(Faye et al., 1994c) were the main research components.
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 117
After reflection and discussion of the results, it was considered that periparturient
diseases were the most important health factor. Thus, health management programmes
targeted at changes in feeding practices, which most influenced periparturient disease
incidence, were developed and extended (Barnouin et al., 1994).
In ecopathology, the diversity of disciplines involved both strengthens the contribution
of epidemiologists (Sabatier et al., 1994) and enlarges the frame of the epidemiological
survey (Calavas et al., 1996). This is done both by including non-medical disciplines (e.g.
animal production, economics, sociology) and by mobilizing the practical knowledge of
extensionists and farmers in management, reproduction, and feeding. These experiences
in expanding the scope of studies and mobilizing stakeholders can provide a useful
starting point for evaluating livestock health and production in even broader contexts.
domesticated plants and animals, biotic and abiotic elements of the underlying soils,
drainage networks, and natural vegetation and wildlife'' (Gallopin, 1995; Waltner-
Toews, 1996). Such systems are self-organizing, that is, through internal autocatalytic
feedback loops, they re-create themselves in particular forms. Furthermore, agroecosys-
tems exist in nested hierarchies from farms and their sub-units up to regional and global
levels. Such hierarchies, in which larger units are comprised of, but with characteristics
which are greater than, the units within them, have been called holarchies, with each unit
being referred to as a holon (Checkland, 1981). These holons are both bounded by, and
necessarily interdependent with, other holons. Farms, subwatersheds and regions are
inextricably linked in a socio-ecological web (Giampietro, 1994).
Since considerable work has already been done in studying and assessing farming
systems, most recent work on agroecosystem health has focussed on scales larger than the
farm (Waltner-Toews, 1996). For example, at the sub-watershed level, the three
constitutive elements of the livestock farming system from an ecopathology view (farmer/
herd/resources) become: (i) a human community including different actors of livestock
activity (farmers and their organizations, political, economic and environmental
managers), (ii) an animal population (domestic herds, wild animals) and (iii) the
biophysical environment (water, nutrients, energy).
Land-time cross budgets have been proposed to link operational objectives of farmers
(for instance, minimization of risk, maximization of income) and activities to achieve
those objectives (such as rotations, livestock systems) with both ecological and economic
variables (Giampietro and Pastore, 1997). This also links the internal workings of farm
activities to the larger energy and matter flows across watersheds.
Another way to understand agroecosystems at a particular level is to create attractor
models in several dimensions. This is based on the observation that many socio-
ecological systems fall into a few patterns of behaviour and resist pressures for change. In
some cases, these appear to represent what Gilberto Gallopin (1997) has called `perverse
resilience', leaving communities in states of economic stagnation and environmental
degradation despite our best efforts to reverse their decline. In other cases,
agroecosystems appear to resist such degradation. Often, such complex systems will
experience sudden, discontinuous changes which can be described in terms of the
catastrophe theory first developed by Rene Thom (see Kay, 1991). If conceptual models
of such attractors and potential `flips' can be created, we can begin to identify their
determinants. These are similar to what have been called determinants of health in the
population health literature.
In herd health programs and ecopathology, management and governance are integrated.
Once one moves beyond the farm gate however, not only are conflicting goals and
perspectives associated with different people, but governance functions and management
functions are separated. This is further complicated by the occurrence of multiple
perspectives across multiple scales.
Institutional and stakeholder analysis can be carried out to determine who should be at
the table, and how to involve them while recognizing political and economic power
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 119
Having set out a holarchy and several dimensions, one must derive some criteria by
which to judge health. Most definitions of health combine a notion of a harmonious
balance (which might be termed integrity, measured in terms of the current functioning of
the system) and the notion of capacity to achieve some goals (sometimes measured in
terms of various forms of social, economic or natural capital). In complex system terms,
one would say that the goal of health management is to foster the ability of the system to
self-organize and evolve over time to adapt to environmental change (Kay and Schneider,
1994). More specifically, one might ask: are the quality and quantity of internal and
external resources sufficient, and is their organization appropriate, for the agroecosystem
to meet its goals (Waltner-Toews and Wall, 1997)?
120 B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128
Fig. 3. A classification framework for agroecosystem health initiatives (adapted from Waltner-Toews and
Nielsen, 1995).
In order for holons to self-organize and adapt, the boundaries of each holon should
remain intact while at the same time fostering interchange among them. Thus, it is
important for farmers' livelihoods to be able to trade, but not to become absorbed into
larger and larger farms; similarly, rural communities cannot remain isolated; however, to
give global free traders an absolute carte blanche to remove materials and energy from a
local community is tantamount to peeling the skin off a live cow and letting its life
exchange freely with the environment.
Since agroecosystems are human re-arrangements of ecological systems, these goals
are fundamentally human ones reflecting a desire to enhance the quality of life for
ourselves and our descendants. Even the desire to maintain biodiversity can be seen as a
way of protecting future options for human community development. In general, one
moves from articulating general goals, to setting operational objectives, to selecting
measurable indicators which can be used to assess progress. Furthermore, just as
variables of interest to those studying the health of farming systems incorporate measures
of longevity, disease, productivity and capacity to respond in relation to goals, so
indicators of agroecosystem health must reflect social, economic and biophysical
dimensions of the system at various levels (Fig. 3).
What emerges from this combination of holarchic system description and goal-setting
by decision-makers is a process which incorporates the participation of farmers,
communities and regional governing organizations in defining and monitoring the health
status of the system of which they are a part. Because the capacity to adapt to
unpredictable future changes is an essential part of health, and local empowerment is an
element in this capacity, selection of indicators a priori by outside experts is counter-
productive. The operational objectives which reflect agroecosystem goals, and indicators
which measure their achievement, can only be identified through a process of negotiation
among those who live in and/or have a stake in the health of those agroecosystems. The
role of researchers and agroecosystem health practitioners in this context shifts from the
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 121
conventional view of experts giving advice, to that of facilitators helping to explore the
possible consequences of alternative choices.
goals that may be conflicting. The creation of platforms for negotiation or other fora is
thus an essential part of agroecosystem health management.
Fig. 4. A research process for agroecosystem health (adapted from Rowley et al., 1997).
B. Faye et al. / Preventive Veterinary Medicine 39 (1999) 111±128 123
the stakeholders are intimately involved in this process, one is not left, in the end, trying
to sell experimental results to recalcitrant farmers or policy-makers.
Agroecosystem health management, being both participatory and structured in a
looping fashion which mimics the system itself (Fig. 4), does not result in a single
definable outcome. In this, agroecosystem health management is quite unlike a simple
experimental approach which asks a simple question under controlled conditions and
receives a simple answer, or industrial management, which may focus on a simple
outcome such as producing more pigs more cheaply. This may be frustrating to those of
us used to well-defined experiments and business managers accustomed to the stable
world of the 1960s and 1970s. Many executives of multi-enterprise corporations,
however, have already recognized the significance of similar approaches in devising
adaptive strategies to a rapidly changing world (Checkland, 1981). It is none too soon for
public institutions to follow suit. The outcome of this approach is a sustainable web of
learning organizations, from farms to communities to global institutions, which are
capable of acting, monitoring and adapting in a world characterized by perpetual change.
researchers in this field have stated flatly that in this arena there is no global truth, only
local truth; that is, every solution is unique, and the only thing that can be generalized is
the process of assessment and adaptation (Kay and Schneider, 1994). Unlike
ecopathology, agroecosystem health has a very short history, and it is still not entirely
clear what is context-specific and what can be generalized.
Currently, researchers from the University of Guelph are involved in agroecosystem
studies in Canada (The Agroecosystem Health Project, University of Guelph), Peru
(Rowley et al., 1997), Honduras and Kenya, with plans on the table for Ethiopia and
Nepal. Over the next several years, these studies should identify many of the problems,
and, hopefully, many of the solutions, necessary to apply agroecosystem health concepts.
6. Final words
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